Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5571

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13938 and 13939 are separated by 206 nucleotides13939 and 13940 are separated by 397 nucleotides mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399,570 to 402,274 13938 mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402,481 to 405,282 13939 mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405,680 to 409,565 13940

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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401,962 + 13938 mRNA_5570 0.88 +0.5
401,979 + 13938 mRNA_5570 0.89 -0.1
402,095 - +1.0
402,097 - +0.3
402,100 + +1.5
402,116 + +1.7
402,240 - +0.7
402,293 + +0.7
403,864 + 13939 mRNA_5571 0.49 -0.2
405,223 + -0.1
405,246 + -1.5
405,340 + -0.6
405,357 - -0.5
405,363 + +0.2
405,368 + +0.1
405,491 + -0.4
405,505 + -0.9
405,517 + +0.1
405,520 - +0.7
405,522 + -0.5
405,526 - -0.4
405,528 + -0.0
405,666 + +0.5
405,763 - -0.2
405,784 - -0.3
405,826 - -0.6
405,838 + -0.5
405,959 + +0.2
405,961 + +0.4
406,097 - 13940 mRNA_5572 0.11 +0.6
406,243 + 13940 mRNA_5572 0.14 -1.4

Or see this region's nucleotide sequence