Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5681

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14048 and 14049 are separated by 390 nucleotides14049 and 14050 are separated by 87 nucleotides mRNA_5680: 14048 - Hypothetical Protein, at 677,076 to 678,500 14048 mRNA_5681: 14049 - KOG3146 Dolichyl pyrophosphate phosphatase and related acid phosphatases, at 678,891 to 679,763 14049 mRNA_5682: 14050 - K03349 APC2 anaphase-promoting complex subunit 2, at 679,851 to 681,974 14050

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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677,980 - 14048 mRNA_5680 0.63 -0.4
678,121 + 14048 mRNA_5680 0.73 -0.6
678,142 + 14048 mRNA_5680 0.75 -0.0
678,256 - 14048 mRNA_5680 0.83 -1.2
678,282 - 14048 mRNA_5680 0.85 +0.5
678,294 + 14048 mRNA_5680 0.85 -0.6
678,423 + +0.9
678,551 - -1.2
678,553 + +0.0
678,554 - +0.7
678,724 + +0.1
678,730 - -0.4
678,759 + +0.3
678,837 - -1.8
678,872 - -0.4
679,743 + +0.5
680,332 - 14050 mRNA_5682 0.23 -0.0

Or see this region's nucleotide sequence