Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5707

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14075 and 14076 are separated by 840 nucleotides mRNA_5707: 14075 - Hypothetical Protein, at 736,463 to 742,238 14075 mRNA_5708: 14076 - KOG4774 Uncharacterized conserved protein, at 743,079 to 743,817 14076

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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735,501 + +0.3
735,512 + +0.3
735,820 + +0.4
735,937 + +1.6
736,516 - +0.5
736,523 + -1.0
736,560 + +0.6
736,724 + +0.8
736,974 - -0.2
737,434 + 14075 mRNA_5707 0.17 -1.2
737,951 - 14075 mRNA_5707 0.26 +0.2
738,261 - 14075 mRNA_5707 0.31 -1.7
738,434 + 14075 mRNA_5707 0.34 +0.8
738,457 - 14075 mRNA_5707 0.35 -0.4
738,556 - 14075 mRNA_5707 0.36 +1.0
738,571 + 14075 mRNA_5707 0.36 -0.9
738,708 - 14075 mRNA_5707 0.39 +0.3
738,722 + 14075 mRNA_5707 0.39 -0.0
738,943 - 14075 mRNA_5707 0.43 -0.4
739,002 - 14075 mRNA_5707 0.44 +0.3
739,751 + 14075 mRNA_5707 0.57 -0.1
739,768 - 14075 mRNA_5707 0.57 +0.1
739,953 - 14075 mRNA_5707 0.60 -0.3
739,963 + 14075 mRNA_5707 0.61 +0.2
739,974 - 14075 mRNA_5707 0.61 +0.3
740,008 - 14075 mRNA_5707 0.61 -0.2
740,324 + 14075 mRNA_5707 0.67 +1.4
740,397 - 14075 mRNA_5707 0.68 +1.2
741,321 - 14075 mRNA_5707 0.84 -0.4
741,382 - 14075 mRNA_5707 0.85 +0.3
741,453 - 14075 mRNA_5707 0.86 -0.2
741,757 + +0.6
741,824 - +0.1
742,051 - -0.1
742,185 - +0.0
742,271 + +0.5
742,393 + +1.2
742,438 - -0.6
742,556 - -0.3
742,559 + -0.4
742,582 + -1.1
742,602 + +0.3
742,717 + -1.6
742,723 - +0.5
742,744 + +0.3
742,761 - +0.2
742,860 - +0.7

Or see this region's nucleotide sequence