Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5735

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14102 and 14103 are separated by 464 nucleotides14103 and 14104 are separated by 564 nucleotides mRNA_5734: 14102 - K01183 E3.2.1.14 chitinase, at 805,175 to 807,034 14102 mRNA_5735: 14103 - K12828 SF3B1, SAP155 splicing factor 3B subunit 1, at 807,499 to 811,509 14103 mRNA_5736: 14104 - K03250 EIF3E, INT6 translation initiation factor 3 subunit E, at 812,074 to 813,868 14104

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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806,821 + 14102 mRNA_5734 0.88 -0.0
807,100 + +1.3
807,111 - +1.0
807,116 + +0.4
807,233 - -0.3
807,245 + +0.6
807,257 - +0.3
807,405 - -0.7
807,409 - -0.0
807,412 + -0.6
807,415 - +1.2
807,421 + +0.3
807,425 + +0.7
807,434 - +1.3
807,435 + -0.6
807,475 + +1.5
811,865 - +1.6
811,886 + -0.2
811,998 - -0.1
812,001 + +0.5
812,057 + +0.1

Or see this region's nucleotide sequence