Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5774

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14141 and 14142 are separated by 582 nucleotides14142 and 14143 are separated by 292 nucleotides mRNA_5773: 14141 - Hypothetical Protein, at 916,684 to 917,418 14141 mRNA_5774: 14142 - K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126, at 918,001 to 918,584 14142 mRNA_5775: 14143 - Hypothetical Protein, at 918,877 to 919,776 14143

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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917,052 - 14141 mRNA_5773 0.50 +0.3
917,053 + 14141 mRNA_5773 0.50 -0.2
917,191 - 14141 mRNA_5773 0.69 +0.8
917,481 + -0.0
917,481 + +0.4
917,485 - +0.7
917,756 - -0.2
917,901 - -0.8
918,071 - 14142 mRNA_5774 0.12 -0.0
918,359 + 14142 mRNA_5774 0.61 -0.1
918,521 + 14142 mRNA_5774 0.89 +1.0
918,612 - -0.7
918,770 + +0.1
918,784 - +0.4
918,791 + +0.3
919,057 - 14143 mRNA_5775 0.20 +0.6
919,209 - 14143 mRNA_5775 0.37 +0.2
919,486 - 14143 mRNA_5775 0.68 +0.4
919,515 - 14143 mRNA_5775 0.71 +0.8

Or see this region's nucleotide sequence