Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5903

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14270 and 14271 are separated by 568 nucleotides14271 and 14272 are separated by 234 nucleotides mRNA_5902: 14270 - K08336 ATG12 ubiquitin-like protein ATG12, at 1,206,662 to 1,207,258 14270 mRNA_5903: 14271 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 1,207,827 to 1,210,876 14271 mRNA_5904: 14272 - KOG4234 TPR repeat-containing protein, at 1,211,111 to 1,212,389 14272

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,206,841 - 14270 mRNA_5902 0.30 -0.1
1,207,139 - 14270 mRNA_5902 0.80 -1.2
1,207,299 - -0.4
1,207,670 - -0.7
1,207,759 - -0.2
1,208,188 + 14271 mRNA_5903 0.12 -0.2
1,208,192 - 14271 mRNA_5903 0.12 -2.5
1,208,195 - 14271 mRNA_5903 0.12 -0.2
1,208,196 + 14271 mRNA_5903 0.12 -1.2
1,208,293 + 14271 mRNA_5903 0.15 +0.2
1,208,589 - 14271 mRNA_5903 0.25 +0.7
1,208,593 - 14271 mRNA_5903 0.25 -0.5
1,209,090 + 14271 mRNA_5903 0.41 -0.4
1,209,096 + 14271 mRNA_5903 0.42 +0.0
1,209,191 + 14271 mRNA_5903 0.45 +0.3
1,209,226 - 14271 mRNA_5903 0.46 +0.0
1,209,287 + 14271 mRNA_5903 0.48 +0.1
1,209,544 - 14271 mRNA_5903 0.56 -2.2
1,209,765 - 14271 mRNA_5903 0.64 -0.6
1,209,875 + 14271 mRNA_5903 0.67 -0.6
1,209,928 - 14271 mRNA_5903 0.69 +0.0
1,209,932 + 14271 mRNA_5903 0.69 -0.1
1,210,007 - 14271 mRNA_5903 0.71 +0.6
1,210,026 + 14271 mRNA_5903 0.72 -0.2
1,210,047 - 14271 mRNA_5903 0.73 -0.3
1,210,133 + 14271 mRNA_5903 0.76 +0.0
1,210,167 - 14271 mRNA_5903 0.77 +0.7
1,210,203 - 14271 mRNA_5903 0.78 +0.3
1,210,219 - 14271 mRNA_5903 0.78 +0.1
1,210,241 - 14271 mRNA_5903 0.79 +0.5
1,210,297 + 14271 mRNA_5903 0.81 -0.1
1,210,304 - 14271 mRNA_5903 0.81 -1.0
1,210,322 + 14271 mRNA_5903 0.82 -0.1
1,210,350 - 14271 mRNA_5903 0.83 -0.2
1,210,358 - 14271 mRNA_5903 0.83 +0.2
1,210,380 + 14271 mRNA_5903 0.84 -0.0
1,210,389 + 14271 mRNA_5903 0.84 +0.2
1,210,389 + 14271 mRNA_5903 0.84 +0.6
1,210,395 + 14271 mRNA_5903 0.84 +0.5
1,210,396 - 14271 mRNA_5903 0.84 +0.2
1,210,399 - 14271 mRNA_5903 0.84 +0.5
1,210,406 - 14271 mRNA_5903 0.85 +0.5
1,210,408 + 14271 mRNA_5903 0.85 -0.8
1,210,416 - 14271 mRNA_5903 0.85 -0.4
1,210,435 + 14271 mRNA_5903 0.86 +0.7
1,210,442 - 14271 mRNA_5903 0.86 +0.4
1,210,442 - 14271 mRNA_5903 0.86 +0.5
1,210,446 + 14271 mRNA_5903 0.86 +0.7
1,210,447 - 14271 mRNA_5903 0.86 -0.3
1,210,448 + 14271 mRNA_5903 0.86 -0.5
1,210,450 - 14271 mRNA_5903 0.86 -0.3
1,210,457 - 14271 mRNA_5903 0.86 +0.7
1,210,457 - 14271 mRNA_5903 0.86 -1.4
1,210,458 + 14271 mRNA_5903 0.86 +1.0
1,210,459 + 14271 mRNA_5903 0.86 -1.6
1,210,460 + 14271 mRNA_5903 0.86 -0.0
1,210,460 + 14271 mRNA_5903 0.86 +0.0
1,210,462 - 14271 mRNA_5903 0.86 -0.0
1,210,464 - 14271 mRNA_5903 0.86 -0.0
1,210,470 + 14271 mRNA_5903 0.87 +0.8
1,210,472 - 14271 mRNA_5903 0.87 +0.2
1,210,478 - 14271 mRNA_5903 0.87 -0.1
1,210,499 + 14271 mRNA_5903 0.88 +0.6
1,210,500 - 14271 mRNA_5903 0.88 +0.9
1,210,509 + 14271 mRNA_5903 0.88 +0.2
1,210,511 + 14271 mRNA_5903 0.88 +0.5
1,210,518 - 14271 mRNA_5903 0.88 -0.2
1,210,518 - 14271 mRNA_5903 0.88 -0.6
1,210,536 + 14271 mRNA_5903 0.89 +0.2
1,210,590 - +0.4
1,210,598 + -0.6
1,210,599 + -0.2
1,210,614 - -0.3
1,210,617 + +0.3
1,210,618 + -0.4
1,210,620 - -0.5
1,210,653 - +1.0
1,210,654 - +0.3
1,210,656 - +1.4
1,210,659 + -0.1
1,210,659 - +0.3
1,210,660 - -0.2
1,210,660 - -0.1
1,210,660 - +0.1
1,210,668 - +0.2
1,210,673 - -0.5
1,210,673 + -0.1
1,210,673 + +0.2
1,210,676 + +0.4
1,210,679 - -0.7
1,210,680 + -0.4
1,210,680 + -0.1
1,210,683 - -2.3
1,210,687 - -2.1
1,210,690 - -0.3
1,210,690 - +1.8
1,210,697 - +1.1
1,210,709 + -1.7
1,210,723 + +2.2
1,210,726 - -0.4
1,210,743 - +0.0
1,210,758 + -0.5
1,210,771 + +0.4
1,210,791 - +0.1
1,210,792 - +0.4
1,210,797 + -1.1
1,210,799 + +0.3
1,210,833 - -0.4
1,210,852 - -0.6
1,210,858 + +1.4
1,210,867 + -0.1
1,210,873 - -1.6
1,210,878 - -1.2
1,210,880 - -0.3
1,210,880 - -0.1
1,210,880 - -0.1
1,210,884 - -0.2
1,210,885 + +0.3
1,210,892 + -0.5
1,210,895 + -0.1
1,210,897 + +0.1
1,210,901 - -0.0
1,210,904 + -0.2
1,210,909 + -0.4
1,210,909 - +0.5
1,210,910 - -1.1
1,210,917 + +0.9
1,210,917 - -1.0
1,210,918 + +0.7
1,210,918 + -1.0
1,210,934 + +0.3
1,210,935 + -1.1
1,210,937 - +0.5
1,210,941 + +0.1
1,210,946 + +0.6
1,210,963 + +0.2
1,211,030 - +0.4
1,211,039 + -1.4
1,211,081 + -1.4
1,211,081 + -1.6
1,211,086 + -0.2
1,211,192 + +0.8
1,211,201 + -1.0
1,211,208 + +0.7
1,211,220 - -0.2
1,211,242 + 14272 mRNA_5904 0.10 +0.2
1,211,243 + 14272 mRNA_5904 0.10 -1.3
1,211,355 - 14272 mRNA_5904 0.19 +1.7
1,211,368 - 14272 mRNA_5904 0.20 -0.2
1,211,378 - 14272 mRNA_5904 0.21 -0.1
1,211,528 - 14272 mRNA_5904 0.33 -0.4
1,211,553 - 14272 mRNA_5904 0.35 +0.2

Or see this region's nucleotide sequence