Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5942

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14309 and 14310 are separated by 488 nucleotides14310 and 14311 are separated by 301 nucleotides mRNA_5941: 14309 - K14676 NTE, NRE lysophospholipid hydrolase, at 1,284,126 to 1,289,660 14309 mRNA_5942: 14310 - HMMPfam-BUD22-PF09073, at 1,290,149 to 1,292,064 14310 mRNA_5943: 14311 - Hypothetical Protein, at 1,292,366 to 1,293,493 14311

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,289,273 - -0.4
1,289,397 + +0.3
1,289,400 - +1.5
1,289,447 + +0.8
1,289,518 + +0.2
1,289,737 - -0.3
1,289,793 - -1.3
1,292,240 - -0.1
1,292,391 + +1.6
1,292,399 - +0.8
1,292,409 + +0.5
1,292,417 + +0.6
1,292,532 - 14311 mRNA_5943 0.15 -0.3
1,292,973 - 14311 mRNA_5943 0.54 +0.7

Or see this region's nucleotide sequence