Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6004

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14371 and 14372 are separated by 178 nucleotides14372 and 14373 are separated by 283 nucleotides mRNA_6003: 14371 - K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5, at 1,429,662 to 1,434,924 14371 mRNA_6004: 14372 - SUPERFAMILY--SSF52047, at 1,435,103 to 1,436,492 14372 mRNA_6005: 14373 - Hypothetical Protein, at 1,436,776 to 1,437,486 14373

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,435,019 - -1.5
1,435,074 - -0.0
1,435,378 + 14372 mRNA_6004 0.20 +0.1
1,435,523 + 14372 mRNA_6004 0.30 +1.2
1,435,556 - 14372 mRNA_6004 0.33 -2.1
1,436,159 + 14372 mRNA_6004 0.76 +0.3
1,436,251 + 14372 mRNA_6004 0.83 -0.9
1,436,254 - 14372 mRNA_6004 0.83 +0.5
1,436,419 + +1.0
1,436,688 - +0.3
1,436,701 + -1.3
1,436,741 + -2.1
1,436,823 + -0.6
1,436,845 + +0.2
1,436,965 - 14373 mRNA_6005 0.27 +0.1
1,437,453 + -0.6

Or see this region's nucleotide sequence