Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6030

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14397 and 14398 are separated by 252 nucleotides14398 and 14399 are separated by 334 nucleotides mRNA_6029: 14397 - K01056 PTH1, pth, spoVC peptidyl-tRNA hydrolase, PTH1 family, at 1,481,515 to 1,482,449 14397 mRNA_6030: 14398 - KOG4036 Uncharacterized conserved protein, at 1,482,702 to 1,483,838 14398 mRNA_6031: 14399 - KOG2890 Predicted membrane protein, at 1,484,173 to 1,485,684 14399

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,482,482 - -0.3
1,482,569 - -0.1
1,482,608 - +0.6
1,482,612 - +2.0
1,482,622 - +0.1
1,482,878 - 14398 mRNA_6030 0.15 +0.5
1,482,946 + 14398 mRNA_6030 0.21 +0.8
1,483,016 - 14398 mRNA_6030 0.28 +0.3
1,483,082 - 14398 mRNA_6030 0.33 +0.2
1,483,212 - 14398 mRNA_6030 0.45 +0.2
1,483,340 + 14398 mRNA_6030 0.56 +0.9
1,483,765 - -0.3
1,484,063 + -0.2
1,484,064 - -0.9
1,484,076 - -0.9
1,484,079 - +0.5
1,484,087 + -0.0
1,484,092 - +0.7
1,484,093 - -0.1
1,484,372 + 14399 mRNA_6031 0.13 -0.1
1,484,394 + 14399 mRNA_6031 0.15 +1.1
1,484,488 - 14399 mRNA_6031 0.21 -0.6
1,484,732 - 14399 mRNA_6031 0.37 +0.6
1,484,812 + 14399 mRNA_6031 0.42 -1.4
1,484,814 - 14399 mRNA_6031 0.42 -0.5

Or see this region's nucleotide sequence