Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6048

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14415 and 14416 are separated by 287 nucleotides14416 and 14417 are separated by 539 nucleotides mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1,515,323 to 1,516,944 14415 mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1,517,232 to 1,519,356 14416 mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1,519,896 to 1,521,308 14417

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,516,432 + 14415 mRNA_6047 0.68 -0.3
1,516,851 + +0.5
1,517,156 - +0.7
1,517,157 - -0.4
1,517,164 - -0.1
1,517,306 + +0.9
1,517,362 + +0.6
1,517,431 + +0.4
1,517,472 - 14416 mRNA_6048 0.11 -0.5
1,517,474 + 14416 mRNA_6048 0.11 +1.3
1,517,585 - 14416 mRNA_6048 0.17 +0.6
1,517,598 + 14416 mRNA_6048 0.17 +1.3
1,517,627 + 14416 mRNA_6048 0.19 -0.3
1,517,627 - 14416 mRNA_6048 0.19 +0.1
1,517,627 + 14416 mRNA_6048 0.19 +2.4
1,517,631 + 14416 mRNA_6048 0.19 +1.3
1,517,647 - 14416 mRNA_6048 0.20 +0.6
1,517,654 + 14416 mRNA_6048 0.20 -0.4
1,518,021 - 14416 mRNA_6048 0.37 +0.9
1,518,027 + 14416 mRNA_6048 0.37 +0.5
1,518,031 - 14416 mRNA_6048 0.38 +0.9
1,518,074 + 14416 mRNA_6048 0.40 +0.4
1,518,227 + 14416 mRNA_6048 0.47 +0.0
1,518,343 + 14416 mRNA_6048 0.52 +0.6
1,518,368 + 14416 mRNA_6048 0.53 -0.0
1,518,385 - 14416 mRNA_6048 0.54 +0.8
1,518,506 - 14416 mRNA_6048 0.60 +0.0
1,518,507 + 14416 mRNA_6048 0.60 +1.0
1,518,525 - 14416 mRNA_6048 0.61 +0.9
1,518,799 - 14416 mRNA_6048 0.74 -1.6
1,518,817 - 14416 mRNA_6048 0.75 -1.8
1,519,024 - 14416 mRNA_6048 0.84 +0.7
1,519,101 - 14416 mRNA_6048 0.88 -0.6
1,519,243 - +0.3
1,519,490 - +1.0
1,519,657 + +0.5
1,519,666 - -0.1
1,519,931 - -2.1
1,519,932 - -0.0
1,519,950 - +0.3
1,520,108 + 14417 mRNA_6049 0.15 -1.3
1,520,136 - 14417 mRNA_6049 0.17 +0.0
1,520,222 - 14417 mRNA_6049 0.23 -0.9
1,520,231 - 14417 mRNA_6049 0.24 +0.5
1,520,271 + 14417 mRNA_6049 0.27 +0.3

Or see this region's nucleotide sequence