Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6068

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14435 and 14436 are separated by 249 nucleotides14436 and 14437 are separated by 220 nucleotides mRNA_6067: 14435 - K14798 LTV1 protein LTV1, at 1,562,800 to 1,564,980 14435 mRNA_6068: 14436 - K01855 PUS3, DEG1 tRNA pseudouridine38/39 synthase, at 1,565,230 to 1,567,371 14436 mRNA_6069: 14437 - KOG0198 MEKK and related serine/threonine protein kinases, at 1,567,592 to 1,572,715 14437

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,565,097 + +0.7
1,565,195 - -0.4
1,565,250 + +0.2
1,565,560 - 14436 mRNA_6068 0.15 -1.2
1,566,121 - 14436 mRNA_6068 0.42 -0.6
1,566,559 - 14436 mRNA_6068 0.62 +0.1
1,566,776 + 14436 mRNA_6068 0.72 +0.4
1,567,266 - +0.4
1,567,438 - -1.1
1,567,752 - +0.3
1,567,864 - -0.2
1,567,960 + +1.4
1,568,030 + +0.4
1,568,120 - 14437 mRNA_6069 0.10 -2.2
1,568,150 - 14437 mRNA_6069 0.11 -0.5
1,568,332 + 14437 mRNA_6069 0.14 -0.1

Or see this region's nucleotide sequence