Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6198

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14565 and 14566 overlap by 2 nucleotides14566 and 14567 are separated by 229 nucleotides mRNA_6197: 14565 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 227,158 to 229,573 14565 mRNA_6198: 14566 - BLAST tyrosine kinase domain protein [Rhizoctonia solani AG..., at 229,572 to 230,681 14566 mRNA_6199: 14567 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 230,911 to 232,731 14567

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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229,579 - +0.2
229,586 + +1.2
229,592 + -0.1
229,596 - +1.0
229,747 + 14566 mRNA_6198 0.16 -2.1
229,752 - 14566 mRNA_6198 0.16 -0.5
229,767 + 14566 mRNA_6198 0.18 -0.4
229,863 + 14566 mRNA_6198 0.26 +1.5
230,266 + 14566 mRNA_6198 0.63 +0.6
230,345 + 14566 mRNA_6198 0.70 +0.1
230,751 + +0.1
231,043 - -0.3
231,085 - +0.2
231,125 + 14567 mRNA_6199 0.12 +0.1
231,212 - 14567 mRNA_6199 0.17 +0.7
231,310 - 14567 mRNA_6199 0.22 +0.4
231,435 - 14567 mRNA_6199 0.29 +0.9
231,605 + 14567 mRNA_6199 0.38 +0.2

Or see this region's nucleotide sequence