Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6263

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14631 and 14632 are separated by 89 nucleotides mRNA_6263: 14631 - Hypothetical Protein, at 389,857 to 392,694 14631 mRNA_6264: 14632 - KOG1550 Extracellular protein SEL-1 and related proteins, at 392,784 to 393,598 14632

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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388,880 - -0.9
389,000 - -0.0
389,015 + -3.5
389,022 + -0.5
389,026 - -1.0
389,027 + +0.3
389,147 + +0.1
389,454 + -0.2
389,469 - -0.6
389,579 + +0.6
389,580 - +0.2
389,584 + -1.1
389,591 - +0.1
389,595 - -0.4
389,606 + +0.4
389,611 - -0.3
389,631 - +0.5
389,648 + +1.2
389,761 + +0.1
389,786 + +0.4
389,819 + -0.2
390,208 + 14631 mRNA_6263 0.12 -2.1
390,485 + 14631 mRNA_6263 0.22 -0.1
390,487 - 14631 mRNA_6263 0.22 +0.1
390,733 - 14631 mRNA_6263 0.31 -1.0
391,071 - 14631 mRNA_6263 0.43 +0.6
391,505 - 14631 mRNA_6263 0.58 -0.0
391,517 + 14631 mRNA_6263 0.58 +0.5
391,551 + 14631 mRNA_6263 0.60 +0.8
391,684 + 14631 mRNA_6263 0.64 +0.9
391,924 - 14631 mRNA_6263 0.73 +0.3
392,268 + 14631 mRNA_6263 0.85 +1.9
392,539 - +0.8
392,692 + +0.5
392,870 - 14632 mRNA_6264 0.11 +1.5
393,130 - 14632 mRNA_6264 0.42 -0.3
393,395 - 14632 mRNA_6264 0.75 +0.6
393,462 + 14632 mRNA_6264 0.83 +0.8

Or see this region's nucleotide sequence