Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6343

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14710 and 14711 are separated by 390 nucleotides14711 and 14712 are separated by 582 nucleotides mRNA_6342: 14710 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 588,897 to 590,459 14710 mRNA_6343: 14711 - K12621 LSM2 U6 snRNA-associated Sm-like protein LSm2, at 590,850 to 591,445 14711 mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592,028 to 595,751 14712

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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589,961 - 14710 mRNA_6342 0.68 +0.3
590,019 + 14710 mRNA_6342 0.72 +0.0
590,311 + -1.6
590,315 + +0.6
590,331 - -1.5
590,612 + -0.2
590,750 - -0.9
590,906 - +0.6
591,483 - -0.4
591,488 + +0.5
591,492 + +0.3
591,495 - +0.2
591,495 - -1.8
591,522 - +0.1
591,656 + +0.7
591,693 + +0.1
591,817 - -0.1
591,840 + -0.3
592,034 + +0.3
592,179 + -0.2
592,242 + +0.5

Or see this region's nucleotide sequence