Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6373

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14740 and 14741 are separated by 527 nucleotides14741 and 14742 are separated by 378 nucleotides mRNA_6372: 14740 - BLAST similar to DNA repair protein Dds20/Mei5 [Botrytis ci..., at 660,336 to 661,808 14740 mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662,336 to 663,388 14741 mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663,767 to 666,324 14742

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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661,411 - 14740 mRNA_6372 0.73 -0.3
661,553 - 14740 mRNA_6372 0.83 -0.8
661,787 - +0.6
661,822 + -1.0
661,830 - +0.7
661,858 - -0.9
661,877 + -0.7
661,881 - -0.2
662,103 + +0.1
662,113 - -0.6
662,116 + +0.0
662,140 - +0.2
662,161 - +0.1
662,276 - +0.1
662,279 - -0.6
663,576 + -1.1
663,798 - -0.4
664,174 + 14742 mRNA_6374 0.16 +0.3

Or see this region's nucleotide sequence