Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6387

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14754 and 14755 are separated by 399 nucleotides14755 and 14756 are separated by 887 nucleotides mRNA_6386: 14754 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 690,611 to 691,768 14754 mRNA_6387: 14755 - Hypothetical Protein, at 692,168 to 693,043 14755 mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693,931 to 695,622 14756

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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691,237 - 14754 mRNA_6386 0.54 +0.1
691,448 - 14754 mRNA_6386 0.72 -1.9
691,592 + 14754 mRNA_6386 0.85 -0.9
692,023 + -0.6
692,279 - 14755 mRNA_6387 0.13 -0.3
692,818 - 14755 mRNA_6387 0.74 -0.2
692,980 - +0.2
693,174 + +0.1
693,265 - -2.0
693,410 - -0.0
693,412 + +0.2
693,436 + +0.8
693,440 - +0.3
693,443 - -1.3
693,569 + +0.6
693,597 + +0.1
693,735 - -0.2
693,748 + -1.4
693,872 + +0.8
693,874 - +0.4
693,885 + -0.1
693,890 + -0.4
693,891 - -1.1

Or see this region's nucleotide sequence