Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6447

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14814 and 14815 are separated by 23 nucleotides14815 and 14816 are separated by 327 nucleotides mRNA_6446: 14814 - Hypothetical Protein, at 814,402 to 816,229 14814 mRNA_6447: 14815 - Hypothetical Protein, at 816,253 to 817,256 14815 mRNA_6448: 14816 - HMMPfam-F-box-like-PF12937, at 817,584 to 818,438 14816

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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815,420 - 14814 mRNA_6446 0.56 -1.4
815,438 - 14814 mRNA_6446 0.57 -1.7
815,531 + 14814 mRNA_6446 0.62 -0.8
815,546 - 14814 mRNA_6446 0.63 -0.4
815,566 + 14814 mRNA_6446 0.64 +0.4
815,621 + 14814 mRNA_6446 0.67 +1.0
815,670 + 14814 mRNA_6446 0.69 +2.0
815,680 + 14814 mRNA_6446 0.70 +0.0
815,797 + 14814 mRNA_6446 0.76 +0.6
815,823 + 14814 mRNA_6446 0.78 -0.0
815,826 - 14814 mRNA_6446 0.78 -0.4
815,925 - 14814 mRNA_6446 0.83 -0.2
815,928 - 14814 mRNA_6446 0.83 -0.0
815,929 + 14814 mRNA_6446 0.84 +0.3
815,930 - 14814 mRNA_6446 0.84 -0.1
815,932 - 14814 mRNA_6446 0.84 -0.7
816,063 + +0.0
816,069 - -0.1
816,098 + +0.1
816,200 - -0.0
816,580 + 14815 mRNA_6447 0.33 -0.2
816,639 + 14815 mRNA_6447 0.38 -0.6
816,944 + 14815 mRNA_6447 0.69 -1.0
817,012 + 14815 mRNA_6447 0.76 +1.6
817,058 + 14815 mRNA_6447 0.80 -1.5
817,060 - 14815 mRNA_6447 0.80 -0.6
817,249 - -0.4
817,272 - -0.2
817,393 - +1.5
817,394 - +1.1
817,608 + +0.2
817,744 - 14816 mRNA_6448 0.19 +1.1

Or see this region's nucleotide sequence