Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6673

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15040 and 15041 are separated by 586 nucleotides15041 and 15042 are separated by 714 nucleotides mRNA_6672: 15040 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1,414,224 to 1,415,709 15040 mRNA_6673: 15041 - Hypothetical Protein, at 1,416,296 to 1,417,315 15041 mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1,418,030 to 1,419,199 15042

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,415,434 + 15040 mRNA_6672 0.81 -2.0
1,415,612 - +2.1
1,415,649 + +0.2
1,415,661 + +0.4
1,415,860 - -0.1
1,415,885 - -0.4
1,415,932 - +0.2
1,415,978 + +0.3
1,415,979 + +1.4
1,416,136 + +0.8
1,416,139 - +0.2
1,416,146 + -1.4
1,416,192 - +0.2
1,416,336 + +0.5
1,416,336 + +0.9
1,416,345 + -0.8
1,416,466 - 15041 mRNA_6673 0.17 +1.4
1,416,469 + 15041 mRNA_6673 0.17 -0.7
1,416,474 + 15041 mRNA_6673 0.17 +0.4
1,416,624 + 15041 mRNA_6673 0.32 +1.2
1,416,636 + 15041 mRNA_6673 0.33 -1.4
1,416,637 - 15041 mRNA_6673 0.33 +0.5
1,416,637 - 15041 mRNA_6673 0.33 +0.0
1,416,637 + 15041 mRNA_6673 0.33 -1.1
1,416,670 - 15041 mRNA_6673 0.37 -0.3
1,416,731 - 15041 mRNA_6673 0.43 -0.2
1,416,755 + 15041 mRNA_6673 0.45 -0.0
1,416,764 - 15041 mRNA_6673 0.46 +0.0
1,416,770 - 15041 mRNA_6673 0.46 +0.0
1,416,778 + 15041 mRNA_6673 0.47 +0.8
1,416,779 - 15041 mRNA_6673 0.47 +0.0
1,416,781 - 15041 mRNA_6673 0.48 +0.7
1,416,836 + 15041 mRNA_6673 0.53 +0.9
1,416,894 + 15041 mRNA_6673 0.59 -0.3
1,416,906 + 15041 mRNA_6673 0.60 -0.2
1,416,915 + 15041 mRNA_6673 0.61 -0.4
1,416,916 + 15041 mRNA_6673 0.61 -1.0
1,416,917 + 15041 mRNA_6673 0.61 -1.1
1,416,919 + 15041 mRNA_6673 0.61 -0.8
1,416,929 - 15041 mRNA_6673 0.62 -0.2
1,416,967 - 15041 mRNA_6673 0.66 -0.7
1,417,048 + 15041 mRNA_6673 0.74 -0.5
1,417,048 + 15041 mRNA_6673 0.74 +0.5
1,417,086 - 15041 mRNA_6673 0.77 -0.7
1,417,226 + -0.9
1,417,233 - -1.0
1,417,234 - +0.2
1,417,235 - +0.6
1,417,361 - -0.2
1,417,363 - -0.7
1,417,377 + -1.1
1,417,380 - +0.1
1,417,381 + -0.3
1,417,383 + -0.2
1,417,389 - -0.9
1,417,389 + -0.0
1,417,409 - -0.1
1,417,495 - +0.5
1,417,506 - -0.7
1,417,510 + +0.7
1,417,514 + -0.7
1,417,534 - +0.2
1,417,543 - -0.9
1,417,549 + -0.3
1,417,552 - -0.6
1,417,555 + +0.6
1,417,566 + -0.1
1,417,603 - -0.0
1,417,604 - +0.1
1,417,619 + +0.3
1,417,625 - -1.6
1,417,625 - +0.9
1,417,642 + -0.8
1,417,652 + -0.2
1,417,661 + +0.5
1,417,698 - +0.4
1,417,700 - +0.4
1,417,717 - +0.3
1,417,723 + +1.2
1,417,728 + -1.6
1,417,729 - +0.5
1,417,734 + -0.1
1,417,766 + +1.9
1,417,769 + +0.9
1,417,777 - -1.6
1,417,784 - -1.1
1,417,828 + -0.5
1,417,853 + +0.5
1,417,857 - +0.7
1,417,859 - +0.5
1,417,896 + +0.4
1,417,900 - +0.7
1,418,019 + -0.1
1,418,024 - +0.6
1,418,053 - +0.8

Or see this region's nucleotide sequence