Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6695

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15063 and 15064 are separated by 319 nucleotides mRNA_6695: 15063 - K01045 PON arylesterase / paraoxonase, at 1,465,595 to 1,467,254 15063 mRNA_6696: 15064 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,467,574 to 1,471,494 15064

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,464,829 + +0.1
1,464,945 + -0.4
1,464,948 - -0.1
1,464,969 + -0.8
1,465,095 - +0.5
1,465,115 + -0.1
1,465,115 + +0.5
1,465,122 - -0.5
1,465,133 + -0.0
1,465,133 + -0.0
1,465,137 - +1.2
1,465,279 + +0.5
1,465,281 + +0.2
1,465,381 - -0.3
1,465,424 + +0.4
1,465,455 - +0.3
1,465,738 + +0.1
1,466,021 - 15063 mRNA_6695 0.26 -1.9
1,466,027 + 15063 mRNA_6695 0.26 -0.8
1,466,091 - 15063 mRNA_6695 0.30 +0.4
1,466,279 + 15063 mRNA_6695 0.41 +0.1
1,466,852 - 15063 mRNA_6695 0.76 +1.8
1,466,878 + 15063 mRNA_6695 0.77 -0.2
1,466,891 + 15063 mRNA_6695 0.78 +0.4
1,466,996 - 15063 mRNA_6695 0.84 -0.1
1,466,998 - 15063 mRNA_6695 0.85 +0.8
1,467,019 + 15063 mRNA_6695 0.86 -0.3
1,467,155 + +0.7
1,467,158 - +0.2
1,467,178 + +0.5
1,467,298 + -0.3
1,467,325 - -0.1
1,467,333 - +0.2
1,467,336 - -0.6
1,467,352 + -0.1
1,467,355 + +0.2
1,467,497 + +0.3
1,467,605 + +1.4
1,467,772 + +1.0
1,467,810 + -0.6
1,467,927 + -0.2
1,468,243 + 15064 mRNA_6696 0.17 +0.4
1,468,251 + 15064 mRNA_6696 0.17 +0.3

Or see this region's nucleotide sequence