Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6703

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15070 and 15071 are separated by 332 nucleotides15071 and 15072 are separated by 99 nucleotides mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,485,831 to 1,488,005 15070 mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,488,338 to 1,490,366 15071 mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,490,466 to 1,492,340 15072

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,487,394 - 15070 mRNA_6702 0.72 +0.6
1,487,513 - 15070 mRNA_6702 0.77 -1.1
1,487,514 + 15070 mRNA_6702 0.77 +0.7
1,487,542 + 15070 mRNA_6702 0.79 +0.4
1,487,717 + 15070 mRNA_6702 0.87 -0.1
1,487,829 + +0.3
1,487,832 - +1.2
1,488,104 + +0.2
1,488,110 - -0.1
1,488,117 + -1.7
1,488,131 + +0.3
1,488,141 + +0.6
1,488,141 + +0.2
1,488,147 - -0.1
1,488,167 - -1.1
1,488,175 + -1.8
1,488,294 - +0.5
1,488,300 - -0.4
1,488,316 - -0.8
1,488,451 + -2.9
1,488,757 + 15071 mRNA_6703 0.21 +0.5
1,488,871 + 15071 mRNA_6703 0.26 -0.1
1,488,881 + 15071 mRNA_6703 0.27 -0.0
1,489,026 - 15071 mRNA_6703 0.34 +0.0
1,489,066 + 15071 mRNA_6703 0.36 +0.3
1,489,787 - 15071 mRNA_6703 0.71 +0.1
1,490,526 - +0.2
1,490,799 - 15072 mRNA_6704 0.18 -0.5
1,491,073 + 15072 mRNA_6704 0.32 -1.2
1,491,219 - 15072 mRNA_6704 0.40 -1.2
1,491,263 + 15072 mRNA_6704 0.43 +0.7

Or see this region's nucleotide sequence