Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6782

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15148 and 15149 are separated by 250 nucleotides15149 and 15150 are separated by 81 nucleotides15150 and 15151 are separated by 240 nucleotides mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115,933 to 117,029 15148 mRNA_6781: 15149 - Hypothetical Protein, at 117,280 to 117,859 15149 mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117,941 to 121,019 15150 mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121,260 to 121,958 15151

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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117,211 + +0.5
117,214 + +0.6
117,215 - +0.2
117,221 + +0.5
117,221 + +0.9
117,240 - -0.9
117,254 + +0.7
117,809 - -2.3
118,250 - 15150 mRNA_6782 0.10 +0.2
118,267 + 15150 mRNA_6782 0.11 +0.1
118,538 - 15150 mRNA_6782 0.19 -0.0
119,823 + 15150 mRNA_6782 0.61 +0.9
121,152 - +0.1
121,162 - +0.5
121,198 + +1.0
121,203 - +0.4
121,204 + +0.4
121,206 + +0.2
121,216 - +0.3
121,221 + -0.5
121,337 - 15151 mRNA_6783 0.11 -0.3
121,505 - 15151 mRNA_6783 0.35 +0.5
121,526 - 15151 mRNA_6783 0.38 +0.6
121,532 + 15151 mRNA_6783 0.39 -0.2
121,533 + 15151 mRNA_6783 0.39 +0.4
121,546 - 15151 mRNA_6783 0.41 -0.0
121,556 + 15151 mRNA_6783 0.42 +0.6
121,819 - 15151 mRNA_6783 0.80 +0.3
121,924 + -0.1
121,962 + -1.1

Or see this region's nucleotide sequence