Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6786

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15153 and 15154 are separated by 349 nucleotides15154 and 15155 are separated by 143 nucleotides15155 and 15156 are separated by 169 nucleotides mRNA_6785: 15153 - K03860 PIGQ, GPI1 phosphatidylinositol glycan, class Q, at 123,273 to 125,638 15153 mRNA_6786: 15154 - K14784 CMS1 protein CMS1, at 125,988 to 127,224 15154 mRNA_6787: 15155 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 127,368 to 127,805 15155 mRNA_6788: 15156 - K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum, at 127,975 to 131,651 15156

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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125,152 - 15153 mRNA_6785 0.79 +1.0
125,159 + 15153 mRNA_6785 0.80 -0.6
125,339 + 15153 mRNA_6785 0.87 -0.7
125,447 + +0.8
125,736 + +0.1
125,764 - -2.3
125,790 - +3.0
125,793 - +1.7
125,918 - +2.6
125,920 - -0.2
125,933 - +0.4
125,956 + -0.0
126,080 - -0.0
126,083 - -0.9
126,084 + -1.6
126,108 + -1.6
126,111 + -0.1
126,527 - 15154 mRNA_6786 0.44 -0.8
127,838 - +0.1
127,841 + -0.0
127,863 + +0.2
127,863 - -0.4
127,864 + +1.0
127,866 - -0.6
127,867 - -1.6
128,011 - +0.8
128,013 + -0.3
128,029 + +0.1
128,058 + -1.0

Or see this region's nucleotide sequence