Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6789

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15156 and 15157 are separated by 123 nucleotides15157 and 15158 are separated by 524 nucleotides mRNA_6788: 15156 - K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum, at 127,975 to 131,651 15156 mRNA_6789: 15157 - KOG3335 Predicted coiled-coil protein, at 131,775 to 132,958 15157 mRNA_6790: 15158 - K00671 E2.3.1.97, NMT glycylpeptide N-tetradecanoyltransferase, at 133,483 to 136,016 15158

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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131,007 - 15156 mRNA_6788 0.82 -0.1
131,199 + 15156 mRNA_6788 0.88 +0.1
131,215 - 15156 mRNA_6788 0.88 +1.2
131,233 + 15156 mRNA_6788 0.89 +0.2
131,369 - +0.1
131,574 - +0.9
131,727 + -0.9
131,817 - -0.2
132,175 + 15157 mRNA_6789 0.34 +1.3
132,449 + 15157 mRNA_6789 0.57 -0.4
132,612 - 15157 mRNA_6789 0.71 -1.6
133,013 + +0.1
133,161 - -0.0
133,257 - +0.2
133,282 - +1.1
133,286 - -1.1
133,287 - -0.4
133,288 - -0.2
133,294 - +1.6
133,296 + +0.8
133,300 - +1.1
133,306 + +0.4
133,309 + +0.0
133,339 + -0.6
133,344 + +0.8
133,354 + -0.4
133,366 + -0.3
133,449 - -0.8
133,458 - +0.4

Or see this region's nucleotide sequence