Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6805

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15172 and 15173 are separated by 118 nucleotides15173 and 15174 are separated by 655 nucleotides mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173,731 to 174,873 15172 mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183 15173 mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176,839 to 177,908 15174

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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174,101 + 15172 mRNA_6804 0.32 +0.2
174,342 - 15172 mRNA_6804 0.53 +0.2
174,637 + 15172 mRNA_6804 0.79 +0.6
174,640 - 15172 mRNA_6804 0.80 +0.8
174,658 + 15172 mRNA_6804 0.81 -0.4
174,749 + 15172 mRNA_6804 0.89 +0.9
174,755 + 15172 mRNA_6804 0.90 -1.8
175,006 + +0.1
175,139 + 15173 mRNA_6805 0.12 -0.2
175,378 + 15173 mRNA_6805 0.32 +0.8
175,381 - 15173 mRNA_6805 0.33 +1.1
175,460 + 15173 mRNA_6805 0.39 -0.5
175,841 + 15173 mRNA_6805 0.71 +0.1
176,378 + +0.5
176,383 + -0.3
176,413 + -0.7
176,416 - -0.1

Or see this region's nucleotide sequence