Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6929

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6929: 15297 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 457,945 to 459,975 15297

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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456,966 - +0.4
457,097 - +0.5
457,098 + +0.4
457,101 - +1.1
457,114 + +2.8
457,232 - -1.6
457,235 - +2.0
457,248 - +0.6
457,249 + +0.8
457,261 + -0.7
457,270 + +0.6
457,345 - -0.0
457,358 + +0.8
457,358 + -0.4
457,363 - -0.3
457,371 + -0.8
457,372 - +0.7
457,373 + +0.5
457,374 - +1.2
457,391 + +0.4
457,394 + +0.3
457,395 + -0.2
457,398 + +0.5
457,407 - +0.3
457,409 - +0.3
457,424 - -0.4
457,431 + +1.9
457,433 - +0.6
457,434 + +0.4
457,436 - -0.3
457,439 - +0.7
457,440 + -0.3
457,441 + +0.1
457,441 - +0.2
457,441 + +0.2
457,441 + -0.9
457,443 + +0.7
457,451 - -0.5
457,464 - -1.2
457,467 + -0.2
457,525 - -0.3
457,575 + +0.6
457,577 - +0.4
457,703 - -0.5
457,724 - +0.4
457,731 + -0.0
457,733 - +0.3
457,733 - +1.2
457,734 + +0.4
457,744 - +0.7
457,751 + +1.0
458,170 - 15297 mRNA_6929 0.11 +1.0
458,183 + 15297 mRNA_6929 0.12 -0.2
458,506 - 15297 mRNA_6929 0.28 -0.8
458,661 + 15297 mRNA_6929 0.35 -0.1
459,028 + 15297 mRNA_6929 0.53 -0.2
459,139 - 15297 mRNA_6929 0.59 +0.1
459,657 + 15297 mRNA_6929 0.84 -0.3
459,792 - -0.7
459,801 + -0.1
459,860 - +0.0
460,068 + +0.1
460,070 - +0.5
460,110 - +1.6
460,112 + -0.9
460,259 - -1.1
460,440 + +0.2
460,481 + +0.3
460,541 + +0.3
460,558 + -0.4
460,662 - -0.5

Or see this region's nucleotide sequence