Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6984

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15351 and 15352 are separated by 226 nucleotides15352 and 15353 are separated by 199 nucleotides mRNA_6983: 15351 - K02145 ATPeV1A, ATP6A V-type H+-transporting ATPase subunit A, at 596,836 to 599,468 15351 mRNA_6984: 15352 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 599,695 to 602,665 15352 mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602,865 to 604,394 15353

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
599,491 - +0.1
599,582 + +1.4
599,865 + -0.8
599,883 - -2.6
600,335 + 15352 mRNA_6984 0.22 -0.5
601,225 + 15352 mRNA_6984 0.51 -0.8
601,538 + 15352 mRNA_6984 0.62 -2.1
601,793 - 15352 mRNA_6984 0.71 -0.7
601,963 + 15352 mRNA_6984 0.76 -0.6
601,968 - 15352 mRNA_6984 0.77 -0.6
602,072 - 15352 mRNA_6984 0.80 -0.2
602,394 - +1.3
602,499 - -0.2
602,531 - -0.9
602,673 - -0.3
602,674 - +0.7
602,680 + -0.5
602,694 - +0.4
602,694 - +0.7
602,715 - -1.0
602,715 - -0.5
602,716 + -0.2
602,717 - +0.1
602,733 + +0.7
602,750 - +0.4
602,801 - -0.2
602,828 - -2.7
602,857 + -1.4
603,083 + 15353 mRNA_6985 0.14 -0.3
603,264 - 15353 mRNA_6985 0.26 +1.0
603,271 - 15353 mRNA_6985 0.27 -0.6
603,374 + 15353 mRNA_6985 0.33 -0.2
603,421 + 15353 mRNA_6985 0.36 -0.2
603,424 + 15353 mRNA_6985 0.37 -0.2
603,588 - 15353 mRNA_6985 0.47 -0.4
603,591 - 15353 mRNA_6985 0.47 +0.5

Or see this region's nucleotide sequence