Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7003

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15371 and 15372 are separated by 132 nucleotides mRNA_7003: 15371 - KOG2394 WD40 protein DMR-N9, at 647,498 to 649,944 15371 mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650,077 to 652,863 15372

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
646,553 + -0.3
647,546 - -2.2
647,688 - -0.6
647,703 - +0.5
647,729 - -0.2
647,741 + -0.4
648,416 - 15371 mRNA_7003 0.38 -0.1
648,714 + 15371 mRNA_7003 0.50 -0.1
648,855 - 15371 mRNA_7003 0.55 +1.5
649,748 - -0.3
649,752 + -0.5
649,865 - -0.1
649,892 + -0.4
649,905 + -0.5
650,016 + +0.6
650,048 + +0.8
650,156 - +0.3
650,173 + -0.3
650,177 + -3.4
650,335 - -0.8
650,348 + -0.8
650,357 - 15372 mRNA_7004 0.10 -0.9
650,365 - 15372 mRNA_7004 0.10 -1.1
650,492 - 15372 mRNA_7004 0.15 -0.2
650,494 + 15372 mRNA_7004 0.15 +0.3
650,624 - 15372 mRNA_7004 0.20 +0.9

Or see this region's nucleotide sequence