Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7016

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15383 and 15384 are separated by 153 nucleotides15384 and 15385 are separated by 113 nucleotides mRNA_7015: 15383 - KOG2913 Predicted membrane protein, at 678,211 to 680,397 15383 mRNA_7016: 15384 - K01142 E3.1.11.2, xthA exodeoxyribonuclease III, at 680,551 to 683,526 15384 mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683,640 to 684,233 15385

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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679,572 - 15383 mRNA_7015 0.62 +0.5
679,869 - 15383 mRNA_7015 0.76 +0.0
680,157 - 15383 mRNA_7015 0.89 +0.2
680,585 + +0.5
680,694 - +0.2
680,711 + +1.2
680,745 + +0.1
680,749 + +0.3
681,158 - 15384 mRNA_7016 0.20 -0.3
681,343 - 15384 mRNA_7016 0.27 +0.0
681,442 + 15384 mRNA_7016 0.30 +1.6
681,639 + 15384 mRNA_7016 0.37 +0.3
681,720 - 15384 mRNA_7016 0.39 -0.4
681,752 + 15384 mRNA_7016 0.40 -0.1
682,025 + 15384 mRNA_7016 0.50 -0.4
682,027 - 15384 mRNA_7016 0.50 +0.3
682,031 + 15384 mRNA_7016 0.50 +0.4
682,167 - 15384 mRNA_7016 0.54 +0.0
682,170 + 15384 mRNA_7016 0.54 +0.6
682,179 + 15384 mRNA_7016 0.55 +0.3
682,186 + 15384 mRNA_7016 0.55 -0.1
682,199 + 15384 mRNA_7016 0.55 +0.2
682,500 - 15384 mRNA_7016 0.65 -0.3
682,564 - 15384 mRNA_7016 0.68 +0.8
682,633 - 15384 mRNA_7016 0.70 +0.1
682,648 + 15384 mRNA_7016 0.70 -0.4
682,948 + 15384 mRNA_7016 0.81 -0.3
682,978 - 15384 mRNA_7016 0.82 -1.1
683,002 + 15384 mRNA_7016 0.82 +0.8
683,114 + 15384 mRNA_7016 0.86 +1.1
683,202 + 15384 mRNA_7016 0.89 -0.7
683,241 - -3.1
683,245 + +0.2
683,412 + +0.0
683,549 + +0.3
683,985 - 15385 mRNA_7017 0.58 +0.8
683,996 - 15385 mRNA_7017 0.60 +1.0
684,100 + 15385 mRNA_7017 0.77 +1.2
684,141 - 15385 mRNA_7017 0.84 +0.2
684,293 + +1.3

Or see this region's nucleotide sequence