Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7166

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15533 and 15534 are separated by 152 nucleotides15534 and 15535 are separated by 177 nucleotides mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004 15533 mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237 15534 mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,035,415 to 1,036,383 15535

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,033,017 + -0.0
1,033,039 + +0.0
1,033,079 + +0.3
1,033,080 + +1.8
1,033,094 + +0.1
1,033,096 + +0.3
1,033,107 + -0.6
1,033,200 + -0.2
1,033,213 - -1.9
1,033,217 - +0.6
1,033,231 - -1.0
1,033,239 + +0.5
1,033,239 - -0.4
1,033,246 + +0.6
1,033,246 + -0.6
1,033,250 + +0.0
1,033,251 - +0.7
1,033,276 - -1.5
1,033,410 + 15534 mRNA_7166 0.12 -0.4
1,034,011 - 15534 mRNA_7166 0.41 +0.2
1,034,292 - 15534 mRNA_7166 0.55 +1.3
1,034,300 + 15534 mRNA_7166 0.55 +0.8
1,034,859 - 15534 mRNA_7166 0.82 +0.6
1,034,859 + 15534 mRNA_7166 0.82 -0.1
1,034,870 + 15534 mRNA_7166 0.82 -2.1
1,035,042 + -0.9
1,035,143 + -1.8
1,035,183 + +0.9
1,035,208 - +1.0
1,035,222 + -0.8
1,035,268 - -0.0
1,035,293 - +0.5
1,035,319 + -0.3
1,035,348 + -0.2
1,035,376 + +0.6
1,035,419 + -0.6
1,035,420 - -0.3
1,035,459 - -0.9
1,035,466 + -0.4
1,035,519 + 15535 mRNA_7167 0.11 +0.1
1,035,570 + 15535 mRNA_7167 0.16 -0.9
1,035,644 - 15535 mRNA_7167 0.24 -1.9
1,035,658 + 15535 mRNA_7167 0.25 +2.5
1,035,664 - 15535 mRNA_7167 0.26 -0.3
1,035,665 + 15535 mRNA_7167 0.26 -1.1
1,035,687 + 15535 mRNA_7167 0.28 -2.1
1,035,737 - 15535 mRNA_7167 0.33 +1.0
1,035,887 + 15535 mRNA_7167 0.49 -0.9
1,036,045 + 15535 mRNA_7167 0.65 -1.2
1,036,189 - 15535 mRNA_7167 0.80 +0.1

Or see this region's nucleotide sequence