Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7200

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15567 and 15568 are separated by 558 nucleotides15568 and 15569 are separated by 171 nucleotides mRNA_7199: 15567 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 1,108,363 to 1,109,217 15567 mRNA_7200: 15568 - K14816 REI1 pre-60S factor REI1, at 1,109,776 to 1,111,554 15568 mRNA_7201: 15569 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1,111,726 to 1,113,474 15569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,108,861 + 15567 mRNA_7199 0.58 +2.3
1,109,003 + 15567 mRNA_7199 0.75 -0.7
1,109,008 - 15567 mRNA_7199 0.75 +0.3
1,109,285 + -0.5
1,109,415 - -0.5
1,109,435 - +0.9
1,109,435 + -0.5
1,109,440 + -0.3
1,109,440 + +1.4
1,109,446 - +0.0
1,109,449 + +0.5
1,109,454 + +0.5
1,109,465 + +0.4
1,109,580 + -0.7
1,109,754 + -0.3
1,111,028 + 15568 mRNA_7200 0.70 +1.3
1,111,164 - 15568 mRNA_7200 0.78 -0.3
1,111,164 + 15568 mRNA_7200 0.78 +1.4
1,111,173 + 15568 mRNA_7200 0.79 +1.3
1,111,456 - -0.4
1,111,603 - +0.3
1,111,607 + -0.1
1,111,762 + -0.1
1,111,900 - +1.3
1,111,928 - 15569 mRNA_7201 0.12 +0.1
1,112,234 + 15569 mRNA_7201 0.29 +0.3

Or see this region's nucleotide sequence