Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7243

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15611 and 15612 are separated by 353 nucleotides mRNA_7243: 15611 - Hypothetical Protein, at 1,207,998 to 1,209,411 15611 mRNA_7244: 15612 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 1,209,765 to 1,211,262 15612

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,207,013 + -0.8
1,207,028 - -0.1
1,207,029 - +0.1
1,207,030 - +0.2
1,207,035 + +0.1
1,207,159 + -0.2
1,207,306 - -0.2
1,207,322 + +0.3
1,207,322 - +0.4
1,207,328 + -0.7
1,207,332 + +0.3
1,207,436 - +0.2
1,207,475 + +0.4
1,207,482 - +0.0
1,207,512 - -1.2
1,207,955 - -0.4
1,208,370 - 15611 mRNA_7243 0.26 +0.1
1,208,627 + 15611 mRNA_7243 0.44 -0.9
1,208,792 + 15611 mRNA_7243 0.56 +0.4
1,209,226 - 15611 mRNA_7243 0.87 +0.6
1,209,233 - 15611 mRNA_7243 0.87 +0.1
1,209,244 + 15611 mRNA_7243 0.88 -0.2
1,209,252 + 15611 mRNA_7243 0.89 -0.5
1,209,399 + +1.0
1,209,404 + +1.0
1,209,404 + +0.3
1,209,526 + -0.5
1,209,528 - -0.0
1,209,530 - -0.4
1,209,537 - -0.9
1,209,668 + +0.6
1,209,671 + +1.0
1,209,691 + +0.2
1,209,802 + +1.3
1,209,830 - -0.3
1,209,836 - +1.0
1,209,916 + 15612 mRNA_7244 0.10 -0.5
1,209,925 + 15612 mRNA_7244 0.11 -0.3
1,209,981 - 15612 mRNA_7244 0.14 -0.1
1,210,002 + 15612 mRNA_7244 0.16 +0.2
1,210,130 - 15612 mRNA_7244 0.24 +0.6
1,210,139 + 15612 mRNA_7244 0.25 +0.3
1,210,269 - 15612 mRNA_7244 0.34 +0.5
1,210,368 - 15612 mRNA_7244 0.40 +0.2
1,210,409 - 15612 mRNA_7244 0.43 +0.2

Or see this region's nucleotide sequence