Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7269

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15635 and 15636 are separated by 324 nucleotides15636 and 15637 are separated by 16 nucleotides15637 and 15638 are separated by 263 nucleotides mRNA_7267: 15635 - Hypothetical Protein, at 1,262,924 to 1,263,981 15635 mRNA_7268: 15636 - Hypothetical Protein, at 1,264,306 to 1,264,888 15636 mRNA_7269: 15637 - Hypothetical Protein, at 1,264,905 to 1,266,240 15637 mRNA_7270: 15638 - ProSiteProfiles-TEA domain profile.-PS51088, at 1,266,504 to 1,267,966 15638

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,264,048 + +0.0
1,264,082 + -0.7
1,264,087 + +0.0
1,264,087 + +1.9
1,264,262 + -0.6
1,264,288 + +0.5
1,264,396 + 15636 mRNA_7268 0.15 +1.8
1,264,434 - 15636 mRNA_7268 0.22 -0.5
1,264,534 + 15636 mRNA_7268 0.39 -0.3
1,264,548 - 15636 mRNA_7268 0.42 +0.9
1,264,550 + 15636 mRNA_7268 0.42 +0.8
1,264,683 + 15636 mRNA_7268 0.65 -0.6
1,264,742 + 15636 mRNA_7268 0.75 +0.3
1,264,963 + -0.3
1,264,964 - +1.2
1,264,998 - -1.4
1,264,999 + -0.4
1,265,000 + +0.4
1,265,002 + +1.3
1,265,026 + +0.2
1,265,032 + +0.2
1,265,033 + -0.3
1,265,252 - 15637 mRNA_7269 0.26 +0.4
1,265,406 + 15637 mRNA_7269 0.38 -0.1
1,265,582 - 15637 mRNA_7269 0.51 -0.2
1,265,662 - 15637 mRNA_7269 0.57 -0.2
1,265,841 - 15637 mRNA_7269 0.70 +0.1
1,265,851 + 15637 mRNA_7269 0.71 +0.4
1,265,951 - 15637 mRNA_7269 0.78 -0.9
1,265,951 - 15637 mRNA_7269 0.78 -0.4
1,265,976 - 15637 mRNA_7269 0.80 +0.9
1,265,994 - 15637 mRNA_7269 0.82 +0.2
1,266,009 - 15637 mRNA_7269 0.83 -0.5
1,266,020 + 15637 mRNA_7269 0.83 +1.4
1,266,033 - 15637 mRNA_7269 0.84 +1.1
1,266,119 + +0.7
1,266,381 - +0.1
1,266,431 + +0.1
1,266,552 - +0.7
1,266,570 - -0.9
1,266,589 + -2.4
1,266,607 - +1.1
1,266,715 - 15638 mRNA_7270 0.14 +0.0
1,266,723 - 15638 mRNA_7270 0.15 -2.1
1,267,018 + 15638 mRNA_7270 0.35 +0.5
1,267,021 - 15638 mRNA_7270 0.35 +2.0

Or see this region's nucleotide sequence