Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7290

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15657 and 15658 are separated by 161 nucleotides15658 and 15659 are separated by 264 nucleotides mRNA_7289: 15657 - K12877 MAGOH protein mago nashi, at 1,306,449 to 1,307,582 15657 mRNA_7290: 15658 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088,SMART-TEA domain-SM00426, at 1,307,744 to 1,309,291 15658 mRNA_7291: 15659 - K16803 CKAP5, XMAP215 cytoskeleton-associated protein 5, at 1,309,556 to 1,318,572 15659

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,307,699 + +1.3
1,307,855 - +0.7
1,307,985 + 15658 mRNA_7290 0.16 +1.0
1,308,265 - 15658 mRNA_7290 0.34 -2.0
1,308,322 - 15658 mRNA_7290 0.37 +0.7
1,308,482 - 15658 mRNA_7290 0.48 +0.4
1,308,944 - 15658 mRNA_7290 0.78 +0.5
1,309,093 + 15658 mRNA_7290 0.87 -0.5
1,309,260 + -0.2
1,309,346 + +0.4
1,309,418 - -0.2
1,309,423 + -0.0
1,309,428 + +0.9
1,309,460 + +2.7
1,309,702 - -1.4
1,309,851 - -1.5
1,309,860 + -0.7
1,309,947 - +0.1
1,310,130 + +0.3
1,310,160 + -0.6

Or see this region's nucleotide sequence