Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7309

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15676 and 15677 are separated by 655 nucleotides mRNA_7308: 15676 - Hypothetical Protein, at 1,360,588 to 1,362,752 15676 mRNA_7309: 15677 - KOG0803 Predicted E3 ubiquitin ligase, at 1,363,408 to 1,369,017 15677

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,362,992 - -0.9
1,363,018 + -1.1
1,363,187 - +0.4
1,363,317 + +0.2
1,363,361 + +1.7
1,363,381 - +0.3
1,363,432 - +0.2
1,363,488 + +0.6
1,363,499 - +1.5
1,363,519 + -2.4
1,363,757 + +0.3
1,363,771 + -0.2
1,363,778 + +1.1
1,363,879 + +1.0
1,363,916 + +0.4
1,364,041 - 15677 mRNA_7309 0.11 +0.1
1,364,091 - 15677 mRNA_7309 0.12 -1.2
1,364,098 + 15677 mRNA_7309 0.12 +1.0
1,364,192 + 15677 mRNA_7309 0.14 -0.5
1,364,348 + 15677 mRNA_7309 0.17 -0.9
1,364,465 - 15677 mRNA_7309 0.19 -0.7
1,365,155 + 15677 mRNA_7309 0.31 -0.7
1,365,376 - 15677 mRNA_7309 0.35 -0.3
1,365,376 - 15677 mRNA_7309 0.35 +0.2
1,365,384 - 15677 mRNA_7309 0.35 +1.1
1,366,008 - 15677 mRNA_7309 0.46 -0.2
1,366,096 - 15677 mRNA_7309 0.48 +0.5
1,366,177 - 15677 mRNA_7309 0.49 -0.3
1,366,350 + 15677 mRNA_7309 0.52 -0.6
1,366,516 + 15677 mRNA_7309 0.55 -0.9
1,366,729 + 15677 mRNA_7309 0.59 +0.3
1,366,833 - 15677 mRNA_7309 0.61 +3.0
1,367,057 - 15677 mRNA_7309 0.65 -0.5
1,367,632 + 15677 mRNA_7309 0.75 +0.6
1,367,632 + 15677 mRNA_7309 0.75 -0.9
1,367,632 + 15677 mRNA_7309 0.75 +0.9
1,367,636 + 15677 mRNA_7309 0.75 +1.0
1,367,758 + 15677 mRNA_7309 0.78 -0.1
1,367,759 - 15677 mRNA_7309 0.78 -0.8
1,367,768 + 15677 mRNA_7309 0.78 +0.5
1,367,834 + 15677 mRNA_7309 0.79 +0.9
1,367,854 + 15677 mRNA_7309 0.79 +0.6
1,367,875 + 15677 mRNA_7309 0.80 -0.4
1,368,525 + +0.6
1,368,597 + +0.0
1,368,925 - -0.3
1,368,931 + +0.4
1,368,936 + -0.1

Or see this region's nucleotide sequence