Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7324

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15691 and 15692 are separated by 250 nucleotides15692 and 15693 are separated by 190 nucleotides mRNA_7323: 15691 - K10579 UBE2M, UBC12 ubiquitin-conjugating enzyme E2 M, at 6,530 to 7,758 15691 mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8,009 to 10,735 15692 mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10,926 to 12,277 15693

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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7,806 - +0.5
7,809 - +0.4
7,940 + +1.0
7,958 - +0.9
7,961 - -0.1
7,969 - +0.2
7,974 - +0.1
8,104 - +0.2
8,107 - +0.3
8,123 + -1.3
8,138 - +0.6
8,277 - +0.3
8,392 - 15692 mRNA_7324 0.14 +1.1
8,429 + 15692 mRNA_7324 0.15 -0.1
8,569 + 15692 mRNA_7324 0.21 +1.7
8,575 + 15692 mRNA_7324 0.21 -0.1
8,666 + 15692 mRNA_7324 0.24 -1.3
8,678 - 15692 mRNA_7324 0.25 -0.3
8,682 + 15692 mRNA_7324 0.25 -0.0
8,702 - 15692 mRNA_7324 0.25 -0.6
8,818 + 15692 mRNA_7324 0.30 +0.9
8,862 - 15692 mRNA_7324 0.31 +1.2
9,008 + 15692 mRNA_7324 0.37 -0.5
9,029 - 15692 mRNA_7324 0.37 +0.4
9,174 - 15692 mRNA_7324 0.43 +0.9
9,375 - 15692 mRNA_7324 0.50 +1.6
9,441 - 15692 mRNA_7324 0.53 -0.0
9,555 - 15692 mRNA_7324 0.57 +1.0
9,559 - 15692 mRNA_7324 0.57 -0.3
9,709 - 15692 mRNA_7324 0.62 -0.6
9,858 - 15692 mRNA_7324 0.68 -1.3
9,865 + 15692 mRNA_7324 0.68 -0.3
10,155 - 15692 mRNA_7324 0.79 +1.3
10,487 - +0.4
10,512 + +0.8
10,628 + -0.1
10,746 + +0.1
10,770 + -0.2
11,170 - 15693 mRNA_7325 0.18 +0.8
11,306 - 15693 mRNA_7325 0.28 -0.5
11,501 - 15693 mRNA_7325 0.43 +1.2
11,631 - 15693 mRNA_7325 0.52 +0.5

Or see this region's nucleotide sequence