Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7430

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15797 and 15798 are separated by 644 nucleotides15798 and 15799 are separated by 329 nucleotides mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252,711 to 255,477 15797 mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256,122 to 258,039 15798 mRNA_7431: 15799 - K12396 AP3D AP-3 complex subunit delta, at 258,369 to 261,553 15799

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
255,443 + +1.5
255,528 - +0.2
255,532 + -0.5
255,564 - +0.5
255,570 + -0.8
255,571 - -0.8
255,574 + +0.3
255,574 + -0.6
255,586 + -0.9
255,704 - +0.4
255,723 - +1.3
255,884 + -0.2
255,892 - -0.4
255,992 - +0.7
256,033 - -0.0
256,044 + -0.2
256,047 - +0.4
256,178 + +0.3
256,587 - 15798 mRNA_7430 0.24 -0.4
256,600 + 15798 mRNA_7430 0.25 -0.5
256,722 + 15798 mRNA_7430 0.31 -0.5
257,145 + 15798 mRNA_7430 0.53 +0.6
257,299 - 15798 mRNA_7430 0.61 -0.3
257,328 + 15798 mRNA_7430 0.63 -0.7
257,594 + 15798 mRNA_7430 0.77 +0.2
257,756 + 15798 mRNA_7430 0.85 -0.1
258,072 + -0.3
258,183 - +1.0
258,490 - +0.4

Or see this region's nucleotide sequence