Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7506

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15873 and 15874 are separated by 283 nucleotides15874 and 15875 are separated by 470 nucleotides mRNA_7505: 15873 - KOG3292 Predicted membrane protein, at 451,426 to 452,379 15873 mRNA_7506: 15874 - K15102 SLC25A3, PHC, PIC solute carrier family 25 (mitochondrial phosphate transporter), member 3, at 452,663 to 454,398 15874 mRNA_7507: 15875 - K17987 NBR1 next to BRCA1 gene 1 protein, at 454,869 to 457,717 15875

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
451,849 + 15873 mRNA_7505 0.44 +1.0
452,393 - -0.6
452,406 - -0.9
452,410 + -0.4
452,503 - +0.4
452,520 - +1.7
452,546 - +1.2
452,547 - +0.0
452,557 - -0.2
452,569 - +0.8
452,570 + +0.8
452,590 + -1.0
452,590 + +0.3
452,593 + -0.9
452,596 - +2.9
452,597 - +0.5
452,694 - +0.6
452,758 + -1.1
452,766 + +0.5
452,875 + 15874 mRNA_7506 0.12 -0.4
452,894 - 15874 mRNA_7506 0.13 +0.9
452,895 - 15874 mRNA_7506 0.13 +1.0
453,312 - 15874 mRNA_7506 0.37 -0.2
453,616 - 15874 mRNA_7506 0.55 -0.9
454,035 - 15874 mRNA_7506 0.79 +0.6
454,039 - 15874 mRNA_7506 0.79 +0.4
454,041 - 15874 mRNA_7506 0.79 +0.2
454,422 - +0.8
454,440 - -0.6
454,511 + -0.4
454,525 + +2.0
454,528 - +0.4
454,536 + -0.3
454,537 + +1.8
454,665 + -0.7
454,670 + +1.5
454,679 - +0.7
454,842 + +0.6
455,095 - -0.2
455,374 - 15875 mRNA_7507 0.18 -0.1

Or see this region's nucleotide sequence