Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7630

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15997 and 15998 are separated by 105 nucleotides15998 and 15999 are separated by 121 nucleotides mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215 15997 mRNA_7630: 15998 - K11353 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13, at 720,321 to 721,070 15998 mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721,192 to 722,141 15999

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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719,353 + 15997 mRNA_7629 0.81 +0.3
719,472 - 15997 mRNA_7629 0.84 +0.8
719,642 + 15997 mRNA_7629 0.88 +0.3
719,743 + 15997 mRNA_7629 0.90 -1.0
720,237 + +0.3
720,348 - +1.2
721,102 + +0.4
721,113 - -0.6
721,113 - +0.0
721,124 + +0.1
721,133 - +0.2
721,136 + +0.9
721,146 - -0.4
721,258 + +0.2
721,438 - 15999 mRNA_7631 0.26 -0.1

Or see this region's nucleotide sequence