Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7642

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16009 and 16010 are separated by 192 nucleotides16010 and 16011 are separated by 427 nucleotides mRNA_7641: 16009 - Hypothetical Protein, at 746,708 to 747,858 16009 mRNA_7642: 16010 - K06943 NOG1 nucleolar GTP-binding protein, at 748,051 to 750,365 16010 mRNA_7643: 16011 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 750,793 to 753,754 16011

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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747,167 - 16009 mRNA_7641 0.40 -0.3
747,404 + 16009 mRNA_7641 0.60 +1.2
747,445 - 16009 mRNA_7641 0.64 +0.2
747,574 - 16009 mRNA_7641 0.75 -1.1
747,600 + 16009 mRNA_7641 0.77 +0.4
747,607 - 16009 mRNA_7641 0.78 +1.2
747,882 - +0.7
747,887 + -0.9
747,904 - +0.1
747,904 - +0.2
747,932 + +0.3
748,181 - +1.9
750,413 + -0.7
750,420 + -1.3
750,761 - +0.7
750,763 + +0.5
750,886 + -0.1
751,326 + 16011 mRNA_7643 0.18 +1.2

Or see this region's nucleotide sequence