Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7660

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16027 and 16028 are separated by 529 nucleotides16028 and 16029 are separated by 242 nucleotides mRNA_7659: 16027 - BLAST acetylornithine transaminase [Moesziomyces antarc..., at 785,561 to 786,043 16027 mRNA_7660: 16028 - Interpro RNA polymerase II transcription mediator complex subunit 9 0, at 786,573 to 787,086 16028 mRNA_7661: 16029 - KOG3337 Protein similar to predicted member of the intramitochondrial sorting protein family, at 787,329 to 788,508 16029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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785,692 - 16027 mRNA_7659 0.27 +0.0
785,842 - 16027 mRNA_7659 0.58 -1.8
785,968 - 16027 mRNA_7659 0.84 +1.1
786,118 - +0.1
786,245 - +1.0
786,265 + +1.2
786,292 + +2.6
786,337 - -0.2
787,147 + -0.3
787,163 + +0.1
787,181 + +0.2
787,291 - +0.6

Or see this region's nucleotide sequence