Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7725

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16092 and 16093 are separated by 408 nucleotides16093 and 16094 are separated by 984 nucleotides mRNA_7724: 16092 - KOG2644 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes, at 932,061 to 933,452 16092 mRNA_7725: 16093 - Hypothetical Protein, at 933,861 to 936,370 16093 mRNA_7726: 16094 - KOG1231 Proteins containing the FAD binding domain, at 937,355 to 939,752 16094

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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933,038 - 16092 mRNA_7724 0.70 -1.3
933,068 - 16092 mRNA_7724 0.72 -0.5
933,307 - 16092 mRNA_7724 0.90 +0.5
933,356 - -1.4
933,363 + -0.5
933,369 + +0.2
933,375 + +0.9
933,489 - +0.9
933,505 - -0.1
933,512 + +0.3
933,512 - -0.0
933,521 + +0.5
933,523 + +0.4
933,531 - +0.1
933,536 + +0.5
933,649 + +1.0
933,673 - +0.5
933,686 + +0.8
933,704 + -0.3
933,863 + -1.1
934,103 + -0.4
934,743 - 16093 mRNA_7725 0.35 -1.0
934,920 + 16093 mRNA_7725 0.42 +0.8
935,081 - 16093 mRNA_7725 0.49 -0.6
935,093 + 16093 mRNA_7725 0.49 -0.0
935,363 + 16093 mRNA_7725 0.60 -0.5
935,409 + 16093 mRNA_7725 0.62 +0.3
935,889 - 16093 mRNA_7725 0.81 -0.4
935,932 - 16093 mRNA_7725 0.83 -0.5
935,936 + 16093 mRNA_7725 0.83 +1.2
935,947 + 16093 mRNA_7725 0.83 -0.2
936,278 + -0.8
936,285 + -0.4
936,345 + +0.6
936,665 - +0.3
936,669 + +1.1
936,675 - +1.2
936,718 + -0.6
936,718 - +1.3
936,791 + -0.3
936,793 - -0.2
936,795 - +1.9
936,833 - +0.3
936,834 + -1.1
936,948 - +1.2
936,966 - +0.9
936,978 - +0.5
936,987 - -0.5
937,082 + +0.4
937,108 - -0.8
937,111 - +0.7
937,122 - -0.0
937,153 - +0.1
937,257 - -1.9
937,274 - -0.2
937,291 + -0.3
937,312 - +0.6

Or see this region's nucleotide sequence