Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7770

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16137 and 16138 are separated by 305 nucleotides16138 and 16139 are separated by 834 nucleotides mRNA_7769: 16137 - KOG2504 Monocarboxylate transporter, at 1,024,603 to 1,026,390 16137 mRNA_7770: 16138 - K09250 CNBP cellular nucleic acid-binding protein, at 1,026,696 to 1,027,876 16138 mRNA_7771: 16139 - HMMPfam-SPFH domain / Band 7 family-PF01145,PRINTS-Stomatin signature-PR00721,SMART-prohibitin homologues-SM00244,SUPERFAMILY--SSF117892, at 1,028,711 to 1,030,372 16139

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,026,012 - 16137 mRNA_7769 0.79 +0.0
1,026,021 + 16137 mRNA_7769 0.79 +0.6
1,026,126 - 16137 mRNA_7769 0.85 -1.2
1,026,287 - +0.9
1,026,296 + +1.1
1,026,321 + -0.4
1,026,431 - +0.8
1,026,431 - +0.2
1,026,444 - -0.3
1,026,448 + +0.1
1,026,454 - +0.7
1,026,455 + +0.4
1,026,460 - +1.2
1,026,466 + +0.2
1,026,471 + +0.3
1,026,487 + -1.0
1,026,506 - +0.1
1,026,517 + +0.1
1,026,523 - -0.1
1,026,545 + +0.2
1,026,579 + +0.2
1,026,620 + -0.8
1,026,622 - +0.3
1,026,637 + -0.5
1,026,681 + +1.2
1,027,044 + 16138 mRNA_7770 0.29 +2.2
1,027,942 + -0.1
1,027,944 - +0.4
1,027,985 + +1.1
1,028,093 - +0.7
1,028,113 + -0.3
1,028,113 - -0.5
1,028,266 + -0.2
1,028,518 - +0.5
1,028,525 + +0.1
1,028,535 - +0.9
1,028,536 + +0.8
1,028,536 + +0.5
1,028,548 - -0.2
1,028,548 - +0.6
1,028,550 - +0.4
1,028,551 - +0.4
1,028,552 + +1.3
1,028,560 + +0.4
1,028,571 + -0.7
1,028,573 + +0.3
1,028,600 + +0.1
1,028,684 - +0.6
1,028,693 - +1.1
1,028,856 - -0.6

Or see this region's nucleotide sequence