Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7780

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16147 and 16148 are separated by 687 nucleotides16148 and 16149 are separated by 36 nucleotides mRNA_7779: 16147 - K06655 PHO85 negative regulator of the PHO system, at 1,043,917 to 1,045,287 16147 mRNA_7780: 16148 - KOG0376 Serine-threonine phosphatase 2A, catalytic subunit, at 1,045,975 to 1,050,892 16148 mRNA_7781: 16149 - K18664 SLH1 antiviral helicase SLH1, at 1,050,929 to 1,056,955 16149

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,045,249 - -0.8
1,045,454 + -0.2
1,045,464 + +0.8
1,045,469 + +0.2
1,045,475 + -0.3
1,045,619 - -0.2
1,045,626 - +1.0
1,045,630 - +1.6
1,045,637 + -0.6
1,045,787 + +0.5
1,046,021 + +0.8
1,046,078 - +0.9
1,046,170 + +0.1
1,046,204 - +1.8
1,046,507 + 16148 mRNA_7780 0.11 +2.8
1,046,527 + 16148 mRNA_7780 0.11 +1.0
1,046,533 - 16148 mRNA_7780 0.11 +1.2
1,046,560 + 16148 mRNA_7780 0.12 +0.5
1,046,617 - 16148 mRNA_7780 0.13 +1.2
1,046,763 - 16148 mRNA_7780 0.16 -1.1
1,046,794 - 16148 mRNA_7780 0.17 -0.3
1,046,800 + 16148 mRNA_7780 0.17 +0.5
1,046,989 + 16148 mRNA_7780 0.21 +0.6
1,046,992 - 16148 mRNA_7780 0.21 +0.2
1,047,082 + 16148 mRNA_7780 0.23 -0.3
1,047,113 - 16148 mRNA_7780 0.23 -0.2
1,047,244 - 16148 mRNA_7780 0.26 +0.5
1,047,514 - 16148 mRNA_7780 0.31 +0.1
1,047,702 + 16148 mRNA_7780 0.35 +0.2
1,047,807 + 16148 mRNA_7780 0.37 +0.1
1,047,959 - 16148 mRNA_7780 0.40 +0.1
1,048,101 - 16148 mRNA_7780 0.43 -0.5
1,048,102 + 16148 mRNA_7780 0.43 -1.3
1,048,251 + 16148 mRNA_7780 0.46 +1.4
1,048,518 - 16148 mRNA_7780 0.52 +0.8
1,048,524 - 16148 mRNA_7780 0.52 +0.9
1,048,536 - 16148 mRNA_7780 0.52 -0.5
1,048,703 - 16148 mRNA_7780 0.55 -1.1
1,048,712 - 16148 mRNA_7780 0.56 +0.3
1,048,727 + 16148 mRNA_7780 0.56 +0.4
1,048,741 + 16148 mRNA_7780 0.56 -0.4
1,048,889 + 16148 mRNA_7780 0.59 -0.6
1,048,906 - 16148 mRNA_7780 0.60 -0.6
1,049,055 - 16148 mRNA_7780 0.63 +2.1
1,049,106 - 16148 mRNA_7780 0.64 +1.7
1,049,136 + 16148 mRNA_7780 0.64 +0.5
1,049,178 + 16148 mRNA_7780 0.65 -0.9
1,049,182 + 16148 mRNA_7780 0.65 +0.2
1,049,203 + 16148 mRNA_7780 0.66 +0.8
1,049,313 - 16148 mRNA_7780 0.68 +0.0
1,049,315 + 16148 mRNA_7780 0.68 -0.3
1,049,327 + 16148 mRNA_7780 0.68 -0.9
1,049,335 - 16148 mRNA_7780 0.68 +0.8
1,049,338 - 16148 mRNA_7780 0.68 +0.4
1,049,454 - 16148 mRNA_7780 0.71 +0.4
1,049,545 - 16148 mRNA_7780 0.73 +0.0
1,049,866 - 16148 mRNA_7780 0.79 -0.5
1,050,055 - 16148 mRNA_7780 0.83 +0.5
1,050,111 - 16148 mRNA_7780 0.84 +0.3
1,050,220 + 16148 mRNA_7780 0.86 +0.5
1,050,549 + +2.4
1,050,689 + +1.3
1,050,908 - +0.1
1,050,943 - -0.1
1,051,013 - -2.1
1,051,022 + +0.9
1,051,085 + +0.4
1,051,197 - +0.1
1,051,302 + +0.4
1,051,304 - +0.6
1,051,304 - -0.6
1,051,315 + -0.1
1,051,504 - +0.5
1,051,537 + 16149 mRNA_7781 0.10 +0.3
1,051,656 + 16149 mRNA_7781 0.12 +0.5
1,051,769 + 16149 mRNA_7781 0.14 -0.6
1,051,770 - 16149 mRNA_7781 0.14 -0.2
1,051,783 + 16149 mRNA_7781 0.14 +0.7
1,051,786 - 16149 mRNA_7781 0.14 +0.3

Or see this region's nucleotide sequence