Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7815

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16182 and 16183 are separated by 430 nucleotides16183 and 16184 are separated by 321 nucleotides mRNA_7814: 16182 - K01620 ltaE threonine aldolase, at 1,131,411 to 1,132,941 16182 mRNA_7815: 16183 - Hypothetical Protein, at 1,133,372 to 1,134,436 16183 mRNA_7816: 16184 - Hypothetical Protein, at 1,134,758 to 1,135,633 16184

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1,132,458 - 16182 mRNA_7814 0.68 +1.5
1,132,460 - 16182 mRNA_7814 0.69 -0.8
1,132,585 + 16182 mRNA_7814 0.77 +0.4
1,132,854 - +0.7
1,133,321 - +0.0
1,133,446 + +0.7
1,133,477 - +1.1
1,133,529 - 16183 mRNA_7815 0.15 -1.5
1,133,620 - 16183 mRNA_7815 0.23 +0.3
1,133,759 + 16183 mRNA_7815 0.36 +0.2
1,134,172 - 16183 mRNA_7815 0.75 +0.3
1,134,187 - 16183 mRNA_7815 0.77 +0.3
1,134,904 + 16184 mRNA_7816 0.17 -0.3
1,134,921 - 16184 mRNA_7816 0.19 -0.4
1,134,929 - 16184 mRNA_7816 0.20 +0.4
1,134,933 - 16184 mRNA_7816 0.20 -0.4
1,134,934 + 16184 mRNA_7816 0.20 -0.8
1,135,010 - 16184 mRNA_7816 0.29 +0.7
1,135,070 - 16184 mRNA_7816 0.36 -0.6
1,135,072 - 16184 mRNA_7816 0.36 -1.5
1,135,082 + 16184 mRNA_7816 0.37 -0.7
1,135,082 - 16184 mRNA_7816 0.37 -0.2
1,135,102 + 16184 mRNA_7816 0.39 +0.1
1,135,102 + 16184 mRNA_7816 0.39 +0.4
1,135,104 + 16184 mRNA_7816 0.39 -1.5
1,135,292 - 16184 mRNA_7816 0.61 -0.0
1,135,325 + 16184 mRNA_7816 0.65 +1.4
1,135,374 - 16184 mRNA_7816 0.70 +0.1

Or see this region's nucleotide sequence