Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7819

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16186 and 16187 are separated by 247 nucleotides16187 and 16188 are separated by 250 nucleotides mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1,138,694 to 1,141,964 16186 mRNA_7819: 16187 - K15015 SLC32A, VGAT solute carrier family 32 (vesicular inhibitory amino acid transporter), at 1,142,212 to 1,144,699 16187 mRNA_7820: 16188 - Hypothetical Protein, at 1,144,950 to 1,145,793 16188

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,141,732 + -1.0
1,141,973 - -0.1
1,141,976 - -0.9
1,141,977 + +0.2
1,141,988 - +1.2
1,142,070 - +1.2
1,142,079 + +1.8
1,142,212 - -0.1
1,142,397 + -1.2
1,142,507 + 16187 mRNA_7819 0.12 -0.6
1,142,529 + 16187 mRNA_7819 0.13 +0.3
1,142,943 + 16187 mRNA_7819 0.29 +0.6
1,142,954 + 16187 mRNA_7819 0.30 -0.9
1,142,956 - 16187 mRNA_7819 0.30 +0.8
1,142,956 - 16187 mRNA_7819 0.30 -0.4
1,142,960 - 16187 mRNA_7819 0.30 -0.4
1,142,977 - 16187 mRNA_7819 0.31 +0.4
1,143,110 + 16187 mRNA_7819 0.36 +0.3
1,143,254 + 16187 mRNA_7819 0.42 +0.2
1,143,761 - 16187 mRNA_7819 0.62 -0.6
1,144,338 + 16187 mRNA_7819 0.85 -0.3
1,144,770 + +0.5
1,144,814 - +0.1
1,145,126 + 16188 mRNA_7820 0.21 +0.9
1,145,249 + 16188 mRNA_7820 0.35 +0.3
1,145,260 - 16188 mRNA_7820 0.37 -0.1
1,145,390 + 16188 mRNA_7820 0.52 -0.1
1,145,399 - 16188 mRNA_7820 0.53 +0.1

Or see this region's nucleotide sequence