Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7901

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_7901: 16269 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 1,335,118 to 1,336,063 16269

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,334,120 - -0.1
1,334,130 + +0.5
1,334,177 - -0.8
1,334,177 + -1.0
1,334,181 - +0.0
1,334,198 - +0.3
1,334,199 + -0.5
1,334,210 + +1.0
1,334,213 - +0.9
1,334,215 + -0.6
1,334,223 + -0.1
1,334,228 - +0.1
1,334,242 - +0.8
1,334,247 - +0.6
1,334,250 - -0.2
1,334,254 - +0.5
1,334,255 + +0.6
1,334,256 + +0.6
1,334,269 - -0.0
1,334,301 - +0.5
1,334,315 - +0.3
1,334,319 - +0.1
1,334,320 + -2.2
1,334,325 + +1.1
1,334,335 - -0.7
1,334,336 + -1.1
1,334,481 - -1.0
1,334,481 + -0.2
1,334,487 + +0.8
1,334,595 + -0.8
1,334,747 - +0.3
1,334,914 + -0.3
1,334,915 - -1.4
1,335,334 - 16269 mRNA_7901 0.23 +2.6
1,335,743 - 16269 mRNA_7901 0.66 +0.8
1,335,811 - 16269 mRNA_7901 0.73 -1.0
1,336,063 + -0.1
1,336,377 - -0.0
1,336,592 + -0.5
1,336,639 + -0.0
1,336,641 - +1.3
1,336,730 - -0.8
1,336,849 + -0.1
1,336,890 + +0.3
1,336,914 + -0.6

Or see this region's nucleotide sequence