Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7918

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16285 and 16286 are separated by 194 nucleotides mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077 16285 mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18,272 to 19,315 16286

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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17,331 + 16285 mRNA_7917 0.57 -1.7
17,480 - 16285 mRNA_7917 0.65 -1.5
17,684 - 16285 mRNA_7917 0.77 +0.6
17,789 - 16285 mRNA_7917 0.83 +0.6
17,900 + 16285 mRNA_7917 0.90 +0.5
18,055 + +1.0
18,058 - +1.2
18,219 + +0.1
18,322 - +0.3
18,351 - -0.2
18,358 - +0.0
18,417 - 16286 mRNA_7918 0.14 -0.0
18,480 - 16286 mRNA_7918 0.20 +0.2
18,788 - 16286 mRNA_7918 0.49 -0.4
18,791 - 16286 mRNA_7918 0.50 +1.0
18,915 + 16286 mRNA_7918 0.62 +0.1
18,916 - 16286 mRNA_7918 0.62 +0.6
19,036 + 16286 mRNA_7918 0.73 -0.3
19,095 + 16286 mRNA_7918 0.79 +0.6
19,100 - 16286 mRNA_7918 0.79 +0.7
19,378 - -0.6
19,588 + -0.5
19,654 - -1.2
19,764 - +1.4
19,817 - +0.7
19,831 - -1.6
19,837 + -0.3
19,914 + -0.1
19,934 - +0.5
19,935 + -0.2
20,235 + +0.5
20,291 - -0.4

Or see this region's nucleotide sequence