Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7951

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16318 and 16319 are separated by 550 nucleotides16319 and 16320 are separated by 251 nucleotides mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76,989 to 79,257 16318 mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79,808 to 82,314 16319 mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82,566 to 84,687 16320

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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79,287 + +0.3
79,343 - -1.0
79,343 - -0.5
79,348 + -0.6
79,394 - -0.3
79,400 + +0.2
79,405 - +0.5
79,409 + -1.0
79,494 + -0.0
79,679 + +0.3
79,798 + +0.5
79,925 - -1.1
79,931 + +0.5
80,080 + 16319 mRNA_7951 0.11 -1.8
80,523 + 16319 mRNA_7951 0.29 +0.5
80,524 - 16319 mRNA_7951 0.29 +0.5
80,912 - 16319 mRNA_7951 0.44 -0.9
80,930 - 16319 mRNA_7951 0.45 -0.6
80,931 + 16319 mRNA_7951 0.45 +0.1
81,061 - 16319 mRNA_7951 0.50 +0.7
81,693 + 16319 mRNA_7951 0.75 -1.5
81,831 + 16319 mRNA_7951 0.81 +0.2
82,009 + 16319 mRNA_7951 0.88 -0.2
82,091 + +0.6
82,124 + +0.2
82,124 + +1.1
82,228 + +2.3
82,317 - -1.0
82,547 + +0.3
82,592 - -1.3
82,721 - -1.2
83,236 - 16320 mRNA_7952 0.32 +0.7
83,237 + 16320 mRNA_7952 0.32 +1.7

Or see this region's nucleotide sequence