Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8033

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16400 and 16401 are separated by 265 nucleotides mRNA_8032: 16400 - K14007 SEC24 protein transport protein SEC24, at 253,423 to 257,120 16400 mRNA_8033: 16401 - K08488 STX7 syntaxin 7, at 257,386 to 258,889 16401

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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257,260 - +0.7
257,277 - -0.4
257,278 - +0.7
257,279 - -1.0
259,015 - +0.1
259,044 + -0.2
259,145 - +0.2
259,147 - +1.1
259,164 + +0.8
259,196 - -1.2
259,202 - +0.7
259,225 - -0.2
259,289 - -0.7
259,289 + +0.2
259,342 - +0.1
259,438 - +0.0
259,441 - +1.4
259,479 - -1.0
259,481 + +0.7
259,494 + -0.2
259,577 - +1.1
259,636 + +1.0
259,657 + -0.3
259,658 - -0.1
259,660 - -1.3
259,660 + +0.3
259,661 + -0.2
259,699 - -0.3
259,701 + +0.9
259,721 - +0.3
259,726 + +1.3
259,743 + -0.1
259,858 - +0.2

Or see this region's nucleotide sequence