Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8034

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16402 and 16403 are separated by 259 nucleotides mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272,460 to 275,670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275,930 to 278,853 16403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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271,576 + -2.1
271,616 - -0.5
271,624 - +0.1
271,624 - +3.1
271,751 + -0.1
271,769 - +0.8
271,783 + -0.7
271,789 + +0.1
271,805 + +0.1
271,842 + -0.5
271,882 + -0.5
271,888 - +0.3
271,920 - +0.6
271,923 + +0.3
271,939 + -0.2
271,943 - +0.3
272,097 + +0.5
272,099 - -0.1
272,247 + +1.6
272,253 - -0.9
272,348 + +0.2
272,372 - +0.7
272,374 - -1.2
272,518 - +0.9
272,537 + -1.4
272,643 + +1.0
272,649 - +0.0
272,686 - +0.8
272,694 - +0.1
272,704 + +0.1
272,795 - 16402 mRNA_8034 0.10 -0.7
272,800 + 16402 mRNA_8034 0.11 +0.4
272,803 + 16402 mRNA_8034 0.11 +0.5
272,805 + 16402 mRNA_8034 0.11 -1.0
272,826 - 16402 mRNA_8034 0.11 -0.9
272,847 + 16402 mRNA_8034 0.12 +0.4
272,848 + 16402 mRNA_8034 0.12 -0.6
272,885 - 16402 mRNA_8034 0.13 +0.1
272,935 + 16402 mRNA_8034 0.15 +0.5
273,010 + 16402 mRNA_8034 0.17 +0.2
273,040 + 16402 mRNA_8034 0.18 -0.6
273,048 + 16402 mRNA_8034 0.18 +0.1
273,053 - 16402 mRNA_8034 0.18 -0.1
273,054 + 16402 mRNA_8034 0.18 +0.4
273,062 + 16402 mRNA_8034 0.19 +0.1
273,068 + 16402 mRNA_8034 0.19 -0.0
273,132 - 16402 mRNA_8034 0.21 +0.1
273,153 - 16402 mRNA_8034 0.22 -0.0
273,183 - 16402 mRNA_8034 0.23 +0.1
273,183 - 16402 mRNA_8034 0.23 -0.7
273,233 - 16402 mRNA_8034 0.24 -1.2
273,331 - 16402 mRNA_8034 0.27 +0.9
273,402 - 16402 mRNA_8034 0.29 -0.3
273,484 + 16402 mRNA_8034 0.32 +0.4
273,828 - 16402 mRNA_8034 0.43 +1.1
273,953 + 16402 mRNA_8034 0.46 +1.0
274,100 - 16402 mRNA_8034 0.51 -0.2
274,229 - 16402 mRNA_8034 0.55 -0.5
274,242 - 16402 mRNA_8034 0.55 -0.2
274,509 - 16402 mRNA_8034 0.64 -0.8
274,826 + 16402 mRNA_8034 0.74 +0.6
275,072 - 16402 mRNA_8034 0.81 +0.0
275,104 - 16402 mRNA_8034 0.82 +1.9
275,223 + 16402 mRNA_8034 0.86 -0.7
275,384 - -0.4
275,417 - -0.6
275,435 + -1.1
275,541 - -1.0
275,563 - +0.0
275,564 - -1.2
275,565 - -0.2
275,571 - +0.1
275,610 - -0.6
275,613 + +0.9
275,633 + -0.6
275,705 - +0.4
275,709 - +0.5
275,713 - +0.3
275,716 + -0.3
275,718 - +0.4
275,723 - +0.1
275,723 - +0.8
275,726 + -1.2
275,735 + +0.2
275,742 - +1.6
275,763 - -1.0
275,763 + -0.0
276,030 + -1.6
276,083 - +0.3
276,166 - -0.0
276,201 - +1.1
276,456 + 16403 mRNA_8035 0.18 +0.4
276,510 - 16403 mRNA_8035 0.20 +0.2

Or see this region's nucleotide sequence